Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007929: Lactobacillus salivarius subsp. salivarius UCC118, complete genome

NCBI: NC_007929

Host Lineage: Lactobacillus salivarius; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus salivarius salivarius strain UCC118 was isolated from the human gastrointestinal tract. This organism produces bacteriocins, antibiotic compounds which have inhibitory effects on pathogenic microorganisms. Lactobacillus salivarius subsp. salivarius strain UCC118 has been extensively studied for its effectiveness as a probiotic to maintain the balance of the gut microbial flora and stimulate the intestinal immune system. Oral and gastrointestinal tract bacterium. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus salivarius was first isolated as part of a survey of human oral lactobacilli and is commonly found in the oral cavity and gastrointestinal tract of humans and other animals.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
167810*9245724648Island text4.4852125.122935.9624Neighbours21BLASTN+67810.gbk
211109213418323092Island text2.0588920.869327.6072Neighbours21BLASTN+111092.gbk
316551818519719680Island text1.6182520.633533.844Neighbours21BLASTN165518.gbk
4210088*23862428537Island text4.9067227.235444.4191Neighbours21BLASTN210088.gbk
529370931436820660Island text2.213619.938634.0663Neighbours21BLASTN+293709.gbk
6428743*45327324531Island text5.9900428.187545.4122Neighbours21BLASTN+428743.gbk
7473500*49963926140Island text4.7097529.368843.5328Neighbours21BLASTNIslandViewer 473500.gbk
8653814*67614122328Island text2.1018719.543436.4478Neighbours21BLASTN653814.gbk
9785875*81097825104Island text1.7238819.105730.2412Neighbours21BLASTN+IslandViewer 785875.gbk
101290568*131407323506Island text4.2763625.631842.8377Neighbours21BLASTN+1290568.gbk
111397989*142649328505Island text4.8812526.131643.5391Neighbours21BLASTN1397989.gbk
121463295*150502641732Island text2.0798922.886232.2042Neighbours21BLASTN+IslandViewer 1463295.gbk
131637261165608018820Island text4.4321418.734820.5689Neighbours21BLASTN+IslandViewer 1637261.gbk
141805000*183399929000Island text5.135727.479543.2665Neighbours21BLASTN+1805000.gbk