Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007925: Rhodopseudomonas palustris BisB18, complete genome

NCBI: NC_007925

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1138927*17109932173Island text2.2432927.653824.695Neighbours11BLASTN+IslandViewer 138927.gbk
21085500111052825029Island text2.3365130.908327.5283Neighbours11BLASTN+IslandViewer 1085500.gbk
31448726*147412025395Island text2.3681922.244329.543Neighbours11BLASTNIslandViewer 1448726.gbk
42892371*291163119261Island text1.5625824.968127.2186Neighbours11BLASTN2892371.gbk
53911323393315121829Island text1.6286420.785716.7925Neighbours11BLASTNIslandViewer 3911323.gbk
63933765395524721483Island text1.5388321.534522.6195Neighbours11BLASTN+IslandViewer 3933765.gbk
74060635*408822427590Island text1.8083825.873220.2777Neighbours11BLASTN+4060635.gbk
84294472431768023209Island text1.5529520.315822.8897Neighbours11BLASTN+4294472.gbk
94355413*438610030688Island text2.0439129.423724.0251Neighbours11BLASTNIslandViewer 4355413.gbk
104756236*477957123336Island text2.2600323.781626.527Neighbours11BLASTN4756236.gbk