Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007908: Rhodoferax ferrireducens T118, complete genome

NCBI: NC_007908

Host Lineage: Rhodoferax ferrireducens; Rhodoferax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from aquifer sediment collected at a depth of 18 feet. Electricity-generating, iron-reducing bacterium. This organism is able to generate electricity in microbial fuel cells.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11010162103411423953Island text1.6514827.62324.6985Neighbours11BLASTN+IslandViewer 1010162.gbk
21108494116189953406Island text1.9881635.086425.5104Neighbours11BLASTN+IslandViewer 1108494.gbk
31252189127831426126Island text1.7807633.048224.4254Neighbours11BLASTN+IslandViewer 1252189.gbk
41328832*136532136490Island text3.2134340.274831.4084Neighbours41BLASTN1328832.gbk
51600244*163173231489Island text1.7736626.469342.6883Neighbours11BLASTN+1600244.gbk
61946902*197232525424Island text1.8006833.170735.1659Neighbours11BLASTN1946902.gbk
73363902338735723456Island text1.4638225.322224.0894Neighbours11BLASTN+IslandViewer 3363902.gbk
84069150*409259123442Island text1.3909626.149128.2982Neighbours11BLASTN4069150.gbk
94677856*471249934644Island text1.8303330.835427.594Neighbours11BLASTN+IslandViewer 4677856.gbk