Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007907: Desulfitobacterium hafniense Y51, complete genome

NCBI: NC_007907

Host Lineage: Desulfitobacterium hafniense; Desulfitobacterium; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain was isolated from soil contaminated with tetrachloroethene (PCE) in Japan. It can efficiently dehalogenate PCEs via trichloroethene (TCE) to cis-1,2-dichloroethene (cis-1,2-DCE). It can also dehalogenase tetra-, penta-, and hexachloroethanes. Hydrocarbon dehalogenator. This organism can dehalogenate a variety of hydrocarbons and can utilize fumarate, sulfite, and thiosulfate (but not thiousulfate) as terminal electron acceptors. Some important pollutants such as polychlorinated biphenyls (PCBs) may be degraded by this organism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1225948*24751621569Island text2.2710233.54558.0169Neighbours32BLASTN225948.gbk
2321537*34758726051Island text2.0649332.383249.7809Neighbours344BLASTN321537.gbk
345616447759921436Island text2.2146831.761928.4794Neighbours32BLASTNIslandViewer 456164.gbk
476148679238530900Island text1.9166732.039230.5007Neighbours21BLASTNIslandViewer 761486.gbk
580889385283943947Island text2.4035236.785923.9526Neighbours21BLASTNIslandViewer 808893.gbk
6960104*103993579832Island text2.5930336.844217.8034Neighbours21BLASTNIslandViewer 960104.gbk
71547539*156909921561Island text1.6840230.384625.8832Neighbours32BLASTNIslandViewer 1547539.gbk
81732500*175150919010Island text2.0578235.28951.0212Neighbours32BLASTN1732500.gbk
91940000196597725978Island text1.7430335.388521.8879Neighbours32BLASTN1940000.gbk
101996194201559919406Island text1.499531.01930.0463Neighbours21BLASTNIslandViewer 1996194.gbk
112249607227250122895Island text1.4596140.679751.1207Neighbours31BLASTN2249607.gbk
122306561*235156545005Island text1.9158834.680937.9919Neighbours21BLASTNIslandViewer 2306561.gbk
132534462255318418723Island text1.6594530.56646.6805Neighbours32BLASTNIslandViewer 2534462.gbk
142830574*285572125148Island text1.6606637.381456.5386Neighbours22BLASTN2830574.gbk
152879568*290876629199Island text2.5312436.647431.6585Neighbours21BLASTNIslandViewer 2879568.gbk
162995889303109935211Island text2.3444636.147620.491Neighbours21BLASTNIslandViewer 2995889.gbk
173230513326443433922Island text2.4019136.155222.5148Neighbours22BLASTN+IslandViewer 3230513.gbk
183472494349615323660Island text1.6827333.212129.8248Neighbours22BLASTN3472494.gbk
193722500376273940240Island text2.7326738.185433.1386Neighbours21BLASTNIslandViewer 3722500.gbk
203872805389990127097Island text2.5983937.273222.4256Neighbours32BLASTNIslandViewer 3872805.gbk
214500000451759917600Island text1.5986730.143535.0286Neighbours21BLASTN4500000.gbk
224692336471361021275Island text2.1282333.31124.5318Neighbours21BLASTN4692336.gbk
234714844473761222769Island text1.685532.375634.8672Neighbours21BLASTNIslandViewer 4714844.gbk
244859735488457824844Island text1.9092231.204430.6371Neighbours21BLASTN4859735.gbk
254926548495257026023Island text2.1011932.791844.0692Neighbours21BLASTNIslandViewer 4926548.gbk
264956500499164135142Island text2.4383136.370734.0132Neighbours21BLASTNIslandViewer 4956500.gbk
275056036508681130776Island text1.6488530.575219.5542Neighbours21BLASTN5056036.gbk
285104476513017825703Island text1.8224131.17719.7832Neighbours21BLASTNIslandViewer 5104476.gbk
295185510527288287373Island text2.1104534.766627.2499Neighbours21BLASTNIslandViewer 5185510.gbk
305297477532099523519Island text1.9108934.990429.7607Neighbours32BLASTNIslandViewer 5297477.gbk
315404608542323118624Island text1.61931.714125.8893Neighbours21BLASTNIslandViewer 5404608.gbk
325428247546271734471Island text2.039737.034923.35Neighbours21BLASTNIslandViewer 5428247.gbk