Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007899: Chlamydophila felis Fe/C-56, complete genome

NCBI: NC_007899

Host Lineage: Chlamydophila felis; Chlamydophila; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Chlamydophila felis strain Fe/C-56 was isolated from a cat with conjunctivitis. Causes conjunctivitis and respiratory disease in cats. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. Some strains of Chlamydophila felis were previously classed under Chlamydia psittaci. Infection in cats leads to inflammation of conjunctiva (the membrane lining the eyelids), rhinitis (inflammation of the nasal mucous membranes) and respiratory problems, endemic in house cats worldwide.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1236715*26080824094Island text1.5151221.771640.0901Neighbours21BLASTN236715.gbk
285476890301148244Island text1.55223.837544.5094Neighbours21BLASTN+854768.gbk