Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007802: Jannaschia sp. CCS1, complete genome

NCBI: NC_007802

Host Lineage: Jannaschia; Jannaschia; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Isolated from Pacific coastal seawater in 2003. CCS1 is an aerobic anoxygenic phototroph (AAnP), using bacteriochlorophyll a to harvest energy from light without formation of oxygen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1179780*20828528506Island text1.7646729.843923.9473Neighbours11BLASTNIslandViewer 179780.gbk
2224470*24611721648Island text1.6037522.441324.4192Neighbours11BLASTN+IslandViewer 224470.gbk
31093785111634222558Island text1.6231220.497936.2833Neighbours11BLASTN+1093785.gbk
41240989126537924391Island text1.5711325.176324.9618Neighbours11BLASTN+IslandViewer 1240989.gbk
51484641*150591621276Island text1.5466225.859321.9678Neighbours11BLASTNIslandViewer 1484641.gbk
61991211*202618734977Island text2.4460236.32225.4822Neighbours11BLASTN+IslandViewer 1991211.gbk
72026500204552019021Island text1.4839724.08229.8331Neighbours11BLASTN+IslandViewer 2026500.gbk
83252300*328200829709Island text2.2713532.265626.6573Neighbours11BLASTN+IslandViewer 3252300.gbk
93575739*362449148753Island text1.5503827.972622.5329Neighbours11BLASTN+IslandViewer 3575739.gbk
103807500382809920600Island text1.6321928.761620.6054Neighbours11BLASTN+3807500.gbk
114071006*409812727122Island text2.5306128.690437.381Neighbours11BLASTN4071006.gbk