Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007799: Ehrlichia chaffeensis str. Arkansas, complete genome

NCBI: NC_007799

Host Lineage: Ehrlichia chaffeensis; Ehrlichia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain is the first isolate of Ehrlichia chaffeensis, which was obtained from a patient on an army base in Arkansas, USA in 1990. Causes disease in humans. This organism is an obligate intracellular pathogen that exists within vacuoles in the cytoplasm of monocytes or granulocytes. Transferred during an insect (tick) bite, it can cause disease in humans (human monocytic ehrlichiosis) and can reside in several other animals and is a problem in immunocompromised patients. The bacterium inhibits phagosome-lysozome fusion as well as programmed cell death (apoptosis) of the host cell, similar to what is observed with Anaplasma phagocytophilum.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
181723*11105029328Island text1.9715820.050332.2803Neighbours21BLASTN81723.gbk
2186000*20833722338Island text3.13617.825939.1156Neighbours21BLASTN+IslandViewer 186000.gbk
3257500*28059923100Island text2.5092420.829737.7853Neighbours21BLASTNIslandViewer 257500.gbk
4284058*30759623539Island text2.2111917.956733.7435Neighbours21BLASTN+IslandViewer 284058.gbk
5392355*41894126587Island text2.5194520.071540.5947Neighbours21BLASTNIslandViewer 392355.gbk
6474931*50195727027Island text1.8601317.709934.3465Neighbours21BLASTN+IslandViewer 474931.gbk
755590058009124192Island text2.0785419.182333.8805Neighbours21BLASTN+IslandViewer 555900.gbk
8647514*67659429081Island text2.2897621.511530.5585Neighbours21BLASTN+IslandViewer 647514.gbk
968635871059924242Island text2.2745920.1132.6105Neighbours21BLASTNIslandViewer 686358.gbk
10727798*74909921302Island text3.1717318.894738.004Neighbours21BLASTNIslandViewer 727798.gbk
11968499*98704218544Island text2.7649218.026531.3985Neighbours21BLASTNIslandViewer 968499.gbk