Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007798: Neorickettsia sennetsu str. Miyayama, complete genome

NCBI: NC_007798

Host Lineage: Neorickettsia sennetsu; Neorickettsia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This organism was first described in 1953 in Japan as causing Sennetsu fever. Causes an infectious mononucleosis-like disease. Like other Ehrlichia, this organism is an obligate intracellular pathogen. It can be transmitted from fish flukes (trematodes) to humans, and was one of the first Ehrlichia that was found to cause a human-specific illness.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
180500*10364023141Island text1.772826.853949.4046Neighbours21BLASTN80500.gbk
2112840*13492522086Island text1.7235526.335845.3684Neighbours21BLASTN+112840.gbk
3213069*23654123473Island text1.9977929.390654.9357Neighbours21BLASTN213069.gbk
4260324*28184521522Island text1.8113225.150551.6303Neighbours21BLASTN+260324.gbk
5301456*32414322688Island text1.6814927.115850.9624Neighbours21BLASTN301456.gbk
6520109*54511125003Island text2.0087528.332848.981Neighbours21BLASTN520109.gbk
7547800*56770219903Island text1.6555525.581647.8865Neighbours21BLASTN547800.gbk
8586500*61167325174Island text2.2658227.174149.8196Neighbours21BLASTN586500.gbk
9652317*69011637800Island text1.5807825.432347.2862Neighbours21BLASTN652317.gbk
10703922*72789123970Island text2.1278929.15849.4573Neighbours21BLASTN+703922.gbk
1175887378167122799Island text1.691625.886147.8765Neighbours21BLASTN+758873.gbk