Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007796: Methanospirillum hungatei JF-1, complete genome

NCBI: NC_007796

Host Lineage: Methanospirillum hungatei; Methanospirillum; Methanospirillaceae; Methanomicrobiales; Euryarchaeota; Archaea

General Information: Isolated from sewage sludge. This organsim is a methanogenic archaeon that has been isolated from bovine rumens, anaerobic sludge digestors and mud.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131691*5299521305Island text1.6866833.220748.6069Neighbours38BLASTN+31691.gbk
2412000*43413622137Island text1.681126.013921.5961Neighbours21BLASTN+IslandViewer 412000.gbk
346872549224023516Island text1.6586827.628516.0799Neighbours38468725.gbk
481740483833120928Island text1.8146126.460710.2762Neighbours38BLASTN+817404.gbk
51291671*131498323313Island text1.4136831.608749.0194Neighbours38BLASTN1291671.gbk
61376910*140067023761Island text1.6423124.626111.8285Neighbours38BLASTN+1376910.gbk
71731500176441032911Island text2.1079129.642113.8159Neighbours21BLASTN+IslandViewer 1731500.gbk
82286713231410127389Island text1.8664228.143211.754Neighbours38BLASTN2286713.gbk
92387002*242101934018Island text3.329631.781813.1603Neighbours21BLASTN+IslandViewer 2387002.gbk
102607240*263066823429Island text1.5779931.037627.7953Neighbours38BLASTN+IslandViewer 2607240.gbk
112966386298912522740Island text1.9646427.200922.2317Neighbours21BLASTN2966386.gbk
123116293*314319226900Island text2.4172228.888217.4995Neighbours38BLASTNIslandViewer 3116293.gbk
133351962337768825727Island text2.4765930.054814.9363Neighbours21BLASTN+IslandViewer 3351962.gbk
143379614*339930919696Island text1.5178427.234317.0453Neighbours21BLASTN+IslandViewer 3379614.gbk
153422000345345631457Island text2.3736829.575915.4705Neighbours21BLASTNIslandViewer 3422000.gbk
163492438*351322820791Island text1.7484232.960441.1795Neighbours38BLASTN+3492438.gbk