Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007795: Staphylococcus aureus subsp. aureus NCTC 8325, complete genome

NCBI: NC_007795

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115414*3645721044Island text1.6258120.479631.1689Neighbours21BLASTN15414.gbk
2511186*53451423329Island text1.5430820.65930.6492Neighbours21BLASTN511186.gbk
354178356019718415Island text1.5327419.467434.6114Neighbours21BLASTN541783.gbk
41370500141025039751Island text1.7086428.455342.6785Neighbours21BLASTN1370500.gbk
51466318148600719690Island text2.3101819.351934.8276Neighbours21BLASTN+1466318.gbk
61774725*179848923765Island text1.8625121.261636.1812Neighbours21BLASTN1774725.gbk
71922000197572353724Island text2.6896620.717337.7441Neighbours21BLASTN+1922000.gbk
82034000206399930000Island text2.0554719.23734.9063Neighbours21BLASTN+2034000.gbk
92163706*218609922394Island text1.5520718.871632.9455Neighbours21BLASTN+2163706.gbk
102299327*231711417788Island text1.6142619.500930.1011Neighbours21BLASTN+2299327.gbk
112455468247857023103Island text1.8479119.5129.9123Neighbours21BLASTN+2455468.gbk
122561928258863926712Island text1.9553623.196833.1164Neighbours21BLASTN2561928.gbk