Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007778: Rhodopseudomonas palustris HaA2, complete genome

NCBI: NC_007778

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11053462*107959926138Island text2.0461329.929915.5752Neighbours11BLASTN+IslandViewer 1053462.gbk
22875973289899723025Island text1.4957520.148314.7156Neighbours11BLASTNIslandViewer 2875973.gbk
33470661350314632486Island text2.2804230.934523.5994Neighbours11BLASTN+IslandViewer 3470661.gbk
43784104*381456530462Island text2.223828.146824.9812Neighbours11BLASTN+IslandViewer 3784104.gbk
53974344399557621233Island text2.0239828.717326.0446Neighbours11BLASTN+IslandViewer 3974344.gbk
64814000*483709923100Island text2.7179427.305227.8226Neighbours11BLASTN4814000.gbk
75079500*510170222203Island text1.6660227.625125.9728Neighbours11BLASTNIslandViewer 5079500.gbk