Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007777: Frankia sp. CcI3, complete genome

NCBI: NC_007777

Host Lineage: Frankia; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from root nodules of Casuarina cunninghamiana in 1983 at Harvard Forest in Petersham, Massachusetts, USA. Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1758859809922215Island text1.9195615.594619.1314Neighbours11BLASTN+75885.gbk
2135222*16590830687Island text2.0925212.985510.8682Neighbours11BLASTN+IslandViewer 135222.gbk
3461500*48580524306Island text2.1302315.020417.7968Neighbours11BLASTN+IslandViewer 461500.gbk
41018824104517626353Island text1.8595916.616611.7409Neighbours11BLASTN+IslandViewer 1018824.gbk
51170406118994019535Island text1.8880613.146511.8407Neighbours11BLASTNIslandViewer 1170406.gbk
61296000131759921600Island text1.541912.789914.3642Neighbours11BLASTN+IslandViewer 1296000.gbk
72186000*220820922210Island text1.5188712.962110.4154Neighbours11BLASTN+IslandViewer 2186000.gbk
82459357247973120375Island text1.765813.398920.0562Neighbours11BLASTNIslandViewer 2459357.gbk
92543475256518621712Island text1.8409615.507517.8128Neighbours11BLASTN+IslandViewer 2543475.gbk
102638580267126232683Island text1.8477418.325130.689Neighbours11BLASTNIslandViewer 2638580.gbk
112749422277456125140Island text2.0162817.57518.8464Neighbours11BLASTNIslandViewer 2749422.gbk
122841000290393262933Island text1.8076619.222133.7507Neighbours11BLASTN+IslandViewer 2841000.gbk
132964500299050526006Island text1.619617.955217.4053Neighbours11BLASTN+2964500.gbk
143000941302809927159Island text2.2689617.825919.569Neighbours11BLASTN+IslandViewer 3000941.gbk
153231649325503523387Island text1.5080413.463618.1691Neighbours11BLASTN+3231649.gbk
163824291384475120461Island text1.5320813.917814.4841Neighbours11BLASTN+3824291.gbk
173962000397994117942Island text1.5324615.334724.6568Neighbours11BLASTN+IslandViewer 3962000.gbk
184016000*403859922600Island text1.7678615.388428.2035Neighbours11BLASTN+IslandViewer 4016000.gbk
194597379462670829330Island text2.5141816.464326.9435Neighbours11BLASTNIslandViewer 4597379.gbk
204796627481750420878Island text1.7024313.794114.2833Neighbours11BLASTN+IslandViewer 4796627.gbk
214892150*493295540806Island text1.592913.785214.5627Neighbours11BLASTN+IslandViewer 4892150.gbk
224954306497563821333Island text1.5328914.390123.3581Neighbours11BLASTN+IslandViewer 4954306.gbk
235087405*511177224368Island text1.8071217.239430.5856Neighbours11BLASTN+IslandViewer 5087405.gbk