Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007776: Synechococcus sp. JA-2-3B'a(2-13), complete genome

NCBI: NC_007776

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: Also known as Cyanobacteria Yellowstone B-Prime, this organism represents a group of Cyanobacteria that have been identified along temperature and vertical gradients in hot spring microbial mats.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147436149367419314Island text1.4977827.358922.5301Neighbours111BLASTN+IslandViewer 474361.gbk
21340741136934828608Island text1.7266730.933328.2364Neighbours111BLASTN+IslandViewer 1340741.gbk
31797699*181766519967Island text1.5504626.754619.5127Neighbours111BLASTN+1797699.gbk
42731981*275119919219Island text1.5239326.703917.9209Neighbours111BLASTN+IslandViewer 2731981.gbk