Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007775: Synechococcus sp. JA-3-3Ab, complete genome

NCBI: NC_007775

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: Also known as Cyanobacteria Yellowstone A-Prime, this organism represents a group of Cyanobacteria that is commonly identified in surface and subsurface layers of hot spring microbial mats.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
172392575059926675Island text1.8738332.522532.0572Neighbours111BLASTN+IslandViewer 723925.gbk
21002934103246129528Island text1.5434426.858117.5128Neighbours111BLASTN+IslandViewer 1002934.gbk
31153631*117609922469Island text1.5494730.538717.3773Neighbours111BLASTN+1153631.gbk
42546833257097324141Island text1.4182726.744918.6015Neighbours111BLASTN+2546833.gbk
52702045272109919055Island text1.4905329.483823.3585Neighbours111BLASTN+IslandViewer 2702045.gbk