Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007761: Rhizobium etli CFN 42, complete genome

NCBI: NC_007761

Host Lineage: Rhizobium etli; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: It is a nitrogen-fixing symbiotic bacteria that interacts with the root of the common bean plant Phaseolus vulgaris. P. etli and its relation to other nitrogen/fixing symbionts has been well studied. The genomic sequence will provide information on the process of symbiosis, on the genetic systems that allow the survival and adaptations of this bacteria to the soil, and on the evolutionary relationship and the symbiosis origin of this organism.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
157199*7943722239Island text2.0400930.473340.8287Neighbours11BLASTN+57199.gbk
2241900*26263520736Island text1.532421.919127.0876Neighbours11BLASTN+IslandViewer 241900.gbk
3781210*81014728938Island text1.7082628.994638.7418Neighbours11BLASTN+IslandViewer 781210.gbk
41097531112469427164Island text1.5780426.972626.1631Neighbours11BLASTN+IslandViewer 1097531.gbk
52071500209009918600Island text1.4932327.354927.612Neighbours11+IslandViewer 2071500.gbk
63047321*306564218322Island text1.5476124.288728.8647Neighbours11BLASTN+IslandViewer 3047321.gbk
73564449*358909924651Island text2.2723330.056339.3207Neighbours11BLASTN+3564449.gbk
83962474*398568423211Island text2.1387630.275743.0752Neighbours11BLASTN3962474.gbk