Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007760: Anaeromyxobacter dehalogenans 2CP-C, complete genome

NCBI: NC_007760

Host Lineage: Anaeromyxobacter dehalogenans; Anaeromyxobacter; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: This strain differs from other isolates based on the combination of its ability to use 2,5-dichlorophenol and its inability to use nitrate as a strong electron acceptor. It can also dechlorinate 2,4-dichlorophenol and 2,4,6-trichlorophenol much faster than other isolates. Can dehalogenate chlorinated phenols. This anaerobic species was originally isolated by enrichment and isolation of single plate-grown colonies, and was the first pure culture of myxobacteria able to grow anaerobically.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1308500*32698318484Island text1.4570713.028913.3634Neighbours11BLASTN+308500.gbk
253582555927723453Island text1.4405315.837816.5428Neighbours11BLASTN+535825.gbk
3645016*66421619201Island text2.3575512.676313.2233Neighbours11BLASTNIslandViewer 645016.gbk
41415663143934123679Island text1.5167816.172226.5258Neighbours11BLASTN1415663.gbk
51806136*183371527580Island text1.7282516.035525.5855Neighbours11BLASTN1806136.gbk
62094746212286228117Island text2.2518614.556714.9796Neighbours11BLASTN+IslandViewer 2094746.gbk
72126956215069023735Island text1.5442812.633810.8357Neighbours11BLASTN+IslandViewer 2126956.gbk
82175992*219609920108Island text1.5318717.860328.2941Neighbours11BLASTN2175992.gbk
92611608263082819221Island text2.483912.612517.3895Neighbours11BLASTN+IslandViewer 2611608.gbk
102897409291699319585Island text1.5306614.828620.1212Neighbours8BLASTN2897409.gbk
113655433369618740755Island text2.034513.964913.6119Neighbours11BLASTNIslandViewer 3655433.gbk
123692798371820525408Island text1.944412.668713.609Neighbours11BLASTNIslandViewer 3692798.gbk
133735749375726421516Island text2.4577614.427317.6279Neighbours11BLASTNIslandViewer 3735749.gbk
143848190*387276224573Island text1.3962712.974218.9365Neighbours11BLASTN+3848190.gbk
153948730397303724308Island text1.4122213.49115.2759Neighbours11BLASTN3948730.gbk
164055860409898143122Island text3.0752716.147912.8175Neighbours11BLASTN+IslandViewer 4055860.gbk
174143301416344720147Island text1.9117412.791814.3943Neighbours11BLASTNIslandViewer 4143301.gbk
184751000477056419565Island text1.4981413.531515.4688Neighbours8BLASTN+4751000.gbk
194911181493806026880Island text3.9619217.568618.8702Neighbours11BLASTNIslandViewer 4911181.gbk