Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007759: Syntrophus aciditrophicus SB, complete genome

NCBI: NC_007759

Host Lineage: Syntrophus aciditrophicus; Syntrophus; Syntrophaceae; Syntrophobacterales; Proteobacteria; Bacteria

General Information: Syntrophus aciditrophicus SB was isolated from sludge from a sewage treatment plant in Norman, Oklahoma, USA. Syntrophic benzoate-oxidizing bacterium. Syntrophus aciditrophicus is able to ferment benzoate when grown in co-culture with hydrogen-consuming methanogens (syntrophic metabolism).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1291368*32274831381Island text1.5414333.972848.1846Neighbours364BLASTN291368.gbk
241545644297727522Island text2.9553844.546121.2781Neighbours23BLASTN415456.gbk
351247753259920123Island text1.6251333.419522.9736Neighbours33BLASTN+IslandViewer 512477.gbk
4585264*60709921836Island text1.6456634.106122.7149Neighbours32BLASTN585264.gbk
562311664160218487Island text1.4843733.700142.5935Neighbours23BLASTN623116.gbk
6723675*74960325929Island text2.1472938.111539.5196Neighbours32BLASTN+IslandViewer 723675.gbk
7964000*98587321874Island text1.5890631.229613.0679Neighbours32BLASTN964000.gbk
81028977*107559946623Island text1.6506433.339223.557Neighbours23BLASTN+IslandViewer 1028977.gbk
91169547119264323097Island text1.5842332.681120.1366Neighbours23BLASTN+1169547.gbk
101356439*139190335465Island text1.8742637.087724.5354Neighbours23BLASTN1356439.gbk
111419171144359924429Island text1.8443234.963127.1188Neighbours33BLASTN+1419171.gbk
121571425*160128029856Island text1.6897735.990324.9236Neighbours23BLASTN1571425.gbk
131666967*168995722991Island text1.7886134.08116.745Neighbours23BLASTN1666967.gbk
141740702176166320962Island text1.5218733.763424.4147Neighbours33BLASTN1740702.gbk
152097734*212913931406Island text1.6611540.006140.4461Neighbours32BLASTN+2097734.gbk
162146254216719420941Island text1.6499132.864917.2346Neighbours23BLASTN+IslandViewer 2146254.gbk
172179000*221740538406Island text2.105538.773221.44Neighbours23BLASTN+IslandViewer 2179000.gbk
182315490233759922110Island text1.7465434.546318.7617Neighbours32BLASTN+2315490.gbk
192608173263375125579Island text2.1180141.871833.5977Neighbours23BLASTN2608173.gbk
202638992265744218451Island text1.5909633.268528.0454Neighbours23BLASTN+IslandViewer 2638992.gbk
212748000*277201124012Island text1.6012633.675831.9771Neighbours33BLASTN+2748000.gbk
222858240*287616617927Island text1.5891231.897521.5861Neighbours33BLASTN+2858240.gbk