Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007722: Erythrobacter litoralis HTCC2594, complete genome

NCBI: NC_007722

Host Lineage: Erythrobacter litoralis; Erythrobacter; Erythrobacteraceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: This strain was collected from the Sargasso Sea at a depth of 10 meters. Phototrophic bacterium. Organisms in this aerobic phototrophic genus are found in marine environments. Members of this group produce bacteriochlorophyll a, which is normally found in anaerobic organisms. One theory to explain this is that the anoxygenic photosynthetic gene cluster was acquired by these organisms via lateral gene transfer. Although they require an organic carbon substrate for growth, they are able to supplement a significant fraction of their metabolic requirements with photosynthetically derviced energy. This species was isolated from a marine cyanobacterial mat. Although they require an organic carbon substrate for growth, they are able to supplement a significant fraction of their metabolic requirements with photosynthetically derviced energy. The presence of the carotenoids bacteriorubixanthinal and erythroxanthin sulfate give this organism a reddish color.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155558*8055925002Island text2.3162225.755330.8493Neighbours11BLASTN+55558.gbk
216893719928730351Island text1.8640126.967919.597Neighbours11BLASTN+IslandViewer 168937.gbk
385112987648525357Island text1.6039623.394923.917Neighbours11BLASTN+IslandViewer 851129.gbk
42172000219518323184Island text1.4444223.370613.8933Neighbours11BLASTN+IslandViewer 2172000.gbk
52954876299092436049Island text1.9463731.01428.7855Neighbours11BLASTN+IslandViewer 2954876.gbk
62993852301643822587Island text1.4945519.777520.7455Neighbours11BLASTN+IslandViewer 2993852.gbk