Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007716: Aster yellows witches'-broom phytoplasma AYWB, complete genome

NCBI: NC_007716

Host Lineage: Aster yellows witches'-broom phytoplasma; Phytoplasma; Acholeplasmataceae; Acholeplasmatales; Tenericutes; Bacteria

General Information: Mycoplasma-like plant pathogen. Aster yellows witches'-broom phytoplasma belongs to a group of mycoplasma-like organisms that infect plants and insects. Phytoplasmas are insect-transmitted plant pathogens that cause economically important diseases in many plant species, including vegetables, ornamentals, and fruit crops. Aster yellows is a sporadic disease of vegetable crops and is transmitted by the aster leafhopper.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1196000*21809922100Island text2.6825813.369431.6604Neighbours21BLASTN+IslandViewer 196000.gbk
2225535*24812122587Island text2.1903514.25131.3741Neighbours21BLASTN+225535.gbk
3266500*29609929600Island text1.9017318.28324.1151Neighbours21BLASTN+266500.gbk
4467235*50266435430Island text1.6866415.801716.5469Neighbours21BLASTN+467235.gbk
5517356*54065723302Island text1.6266516.986924.936Neighbours21BLASTN+517356.gbk