Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007681: Methanosphaera stadtmanae DSM 3091, complete genome

NCBI: NC_007681

Host Lineage: Methanosphaera stadtmanae; Methanosphaera; Methanobacteriaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: Isolated from human feces. Methanogen that uses methanol and hydrogen to produce methane. This organism produces methane from methanol and hydrogen unlike most methanogens that use carbon dioxide and hydrogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1121150*13977618627Island text1.4456514.828615.4769Neighbours21BLASTN+121150.gbk
215347617839824923Island text1.6180115.92424.4592Neighbours21BLASTN153476.gbk
321892124757328653Island text1.6114718.35325.8295Neighbours21BLASTN+218921.gbk
4402773*42762724855Island text3.0382817.16230.2351Neighbours21BLASTN402773.gbk
548244550728724843Island text1.8635815.697219.5421Neighbours21BLASTNIslandViewer 482445.gbk
654249456434521852Island text4.8130215.211632.9821Neighbours21BLASTNIslandViewer 542494.gbk
7600187*61867418488Island text1.8040914.062520.5993Neighbours21BLASTN+600187.gbk
8657351*68076123411Island text1.8051314.63427.4699Neighbours21BLASTN657351.gbk
9696252*74041244161Island text1.8301316.081329.3902Neighbours21BLASTN+696252.gbk
1077026778990419638Island text1.6972214.97618.098Neighbours21BLASTN+770267.gbk
11848084*86678718704Island text2.617316.591725.4416Neighbours21BLASTN+848084.gbk
1287100089276021761Island text1.5068515.530823.1514BLASTN871000.gbk
13930921*95436223442Island text2.3045116.26121.7821Neighbours21BLASTN+930921.gbk
14979815*100245322639Island text2.5185413.597428.6028Neighbours21BLASTN+979815.gbk
151007375*105211944745Island text3.0730417.503332.9623Neighbours21BLASTN1007375.gbk
161082000110495722958Island text1.7424814.93817.7854Neighbours21+1082000.gbk
171157402*118309925698Island text3.3780817.770135.608Neighbours21BLASTN1157402.gbk
181254566128660732042Island text1.6803316.572623.0752Neighbours21BLASTN+1254566.gbk
191300068*132484524778Island text2.2277819.170829.41Neighbours21BLASTN1300068.gbk
201455425*147908523661Island text1.763613.044122.2865Neighbours21BLASTN1455425.gbk
211532500*155846125962Island text2.8360818.699929.843Neighbours21BLASTN1532500.gbk
221608223165609947877Island text1.9917517.107324.5825Neighbours21BLASTN1608223.gbk