Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007677: Salinibacter ruber DSM 13855, complete genome

NCBI: NC_007677

Host Lineage: Salinibacter ruber; Salinibacter; Rhodothermaceae; Bacteroidetes Order II; Bacteroidetes; Bacteria

General Information: This organism is an extremely halophilic aerobe originally isolated from saltern crystallizer ponds in Spain. These bacteria can coexist in significant colonies with halophilic archaea under saline conditions. In contrast to other bacteria they do not regulate their intracellular salt conditions through proton pumps, but instead their protein makeup has adapted to be functional under high ionic conditions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1715329136419833Island text2.2841918.619329.4311Neighbours11BLASTN+71532.gbk
211762514009922475Island text1.495520.27624.1077Neighbours11BLASTN+117625.gbk
324184629591954074Island text2.3178723.51219.8083Neighbours11BLASTN+IslandViewer 241846.gbk
432400035159927600Island text2.1808823.238523.5102Neighbours11BLASTN324000.gbk
577116883459963432Island text5.4425531.322732.6472Neighbours11BLASTN+IslandViewer 771168.gbk
61312243*133416021918Island text1.6059120.205835.5654Neighbours11BLASTN1312243.gbk
71354500*141209957600Island text3.2238132.171625.119Neighbours11BLASTN+IslandViewer 1354500.gbk
81847913*186951321601Island text2.5419121.425118.7401Neighbours11BLASTN1847913.gbk
91872459189242719969Island text1.6971319.631623.858Neighbours11BLASTN+1872459.gbk
101911109*193131320205Island text1.7245718.968913.8446Neighbours11BLASTN1911109.gbk
112361049238784226794Island text1.7189522.876230.5732Neighbours11BLASTN2361049.gbk
122687000270517318174Island text1.590518.874619.369Neighbours11BLASTN2687000.gbk
133316540*334242725888Island text3.6171127.396533.1229Neighbours11BLASTN3316540.gbk
143469661349473025070Island text2.2749123.091621.7383Neighbours11BLASTN3469661.gbk
153505487352560020114Island text1.6567519.424921.0866Neighbours11BLASTN+3505487.gbk