Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007651: Burkholderia thailandensis E264 chromosome I, complete sequence

NCBI: NC_007651

Host Lineage: Burkholderia thailandensis; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism was originally isolated from a rice field sample in Thailand. Burkholderia thailandensis is a common soil saprophyte (lives on decaying organic matter in the soil). This bacterium is very similar to the human and animal pathogen Burkholderia pseudomallei but appears to be avirulent. Distinguishing the two organisms is very difficult and may depend on using monoclonal antibodies to detect differences in exopolysaccharide production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
172952*14574172790Island text2.0540123.150721.1527Neighbours11BLASTN+IslandViewer 72952.gbk
21620000*165256732568Island text2.1286520.472621.665Neighbours11BLASTN+IslandViewer 1620000.gbk
31662558168442221865Island text1.5849922.695828.534Neighbours11BLASTN+IslandViewer 1662558.gbk
41726472175232825857Island text1.4240823.753616.7925Neighbours11BLASTN+IslandViewer 1726472.gbk
52166000*218478418785Island text1.5203517.056813.6436Neighbours11BLASTN+IslandViewer 2166000.gbk
62639553*269172452172Island text1.6295521.66228.75868Neighbours11BLASTN+IslandViewer 2639553.gbk
73064530*3173670109141Island text2.2915527.48729.6572Neighbours11BLASTN+IslandViewer 3064530.gbk
83560652*359749336842Island text2.4746829.654317.3389Neighbours11BLASTN+IslandViewer 3560652.gbk
93656433367931922887Island text1.4787821.044614.8969Neighbours11BLASTN+IslandViewer 3656433.gbk
103719191*374181722627Island text1.603820.788526.0437Neighbours11BLASTN+IslandViewer 3719191.gbk