Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007650: Burkholderia thailandensis E264 chromosome II, complete sequence

NCBI: NC_007650

Host Lineage: Burkholderia thailandensis; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism was originally isolated from a rice field sample in Thailand. Burkholderia thailandensis is a common soil saprophyte (lives on decaying organic matter in the soil). This bacterium is very similar to the human and animal pathogen Burkholderia pseudomallei but appears to be avirulent. Distinguishing the two organisms is very difficult and may depend on using monoclonal antibodies to detect differences in exopolysaccharide production.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18414010870224563Island text2.4864324.762924.1138Neighbours11BLASTN+84140.gbk
242074544753126787Island text1.8943122.977317.1416Neighbours11BLASTN+IslandViewer 420745.gbk
3722961*74620423244Island text1.7386122.235219.066Neighbours11BLASTN+IslandViewer 722961.gbk
4832507*85444621940Island text1.885627.09925.2764Neighbours11BLASTN+832507.gbk
51192310122299130682Island text1.6432717.060221.0106Neighbours11BLASTN+IslandViewer 1192310.gbk
62429307*246662437318Island text2.6953326.443921.1494Neighbours11BLASTN+IslandViewer 2429307.gbk
72901751292799926249Island text1.4359520.409828.5236Neighbours11BLASTN+2901751.gbk