Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007645: Hahella chejuensis KCTC 2396, complete genome

NCBI: NC_007645

Host Lineage: Hahella chejuensis; Hahella; Hahellaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: This organism was isolated from marine sediment from Cheju Island, Republic of Korea. Hahella chejuensis is a slight halophile with an optimum salinity of 2%. This organism produces a large amount of exopolysaccharide, which has potential as an emulsification agent.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
160550062810522606Island text1.8696736.67134.0497Neighbours52BLASTN+IslandViewer 605500.gbk
2713930*73723023301Island text1.4966135.815939.2496Neighbours52BLASTN713930.gbk
382950084841218913Island text1.5408633.183429.827Neighbours52BLASTN+829500.gbk
41033834*105409920266Island text2.3286435.512347.9821Neighbours25BLASTNIslandViewer 1033834.gbk
51194550122635931810Island text1.7240.290145.7406Neighbours52BLASTN+1194550.gbk
61245927*126577919853Island text1.6964636.110855.5092Neighbours52BLASTN+IslandViewer 1245927.gbk
71336227*136476028534Island text2.929841.608428.8931Neighbours41BLASTN+1336227.gbk
81378337139902820692Island text1.7230737.324841.1118Neighbours52BLASTN+IslandViewer 1378337.gbk
91443296146759924304Island text2.6273242.012838.8132Neighbours52BLASTN+1443296.gbk
101698803173126032458Island text1.6261236.843438.7486Neighbours52BLASTN+1698803.gbk
111785000*180263017631Island text1.6441433.976833.9079Neighbours52BLASTN+1785000.gbk
122049988*207112921142Island text2.1795537.450332.9078Neighbours52BLASTN+IslandViewer 2049988.gbk
132112622214396831347Island text2.1124440.081447.1656BLASTNIslandViewer 2112622.gbk
142181739*220575424016Island text1.7916737.360256.1305Neighbours52BLASTN2181739.gbk
152204066*222275718692Island text1.5711233.575545.1334Neighbours52BLASTN+2204066.gbk
162294553*233310238550Island text2.06937.704538.9088Neighbours45BLASTN+IslandViewer 2294553.gbk
172408125*246220454080Island text2.9458244.465447.1047Neighbours25BLASTN+IslandViewer 2408125.gbk
182533274255747624203Island text1.8273234.578728.8829Neighbours52BLASTN+2533274.gbk
192628423*265192123499Island text2.1508537.293941.6819Neighbours52BLASTN+2628423.gbk
202779381*283209952719Island text2.9255845.131342.1196Neighbours25BLASTN+IslandViewer 2779381.gbk
212842957286489821942Island text1.8579334.995142.2357Neighbours52BLASTN+2842957.gbk
222922190294546523276Island text2.4258738.692633.3093Neighbours11BLASTN+IslandViewer 2922190.gbk
233227098325155024453Island text2.179838.954144.1666Neighbours52BLASTNIslandViewer 3227098.gbk
243343815337007526261Island text2.3452639.486841.0131Neighbours41BLASTN+IslandViewer PAI DB3343815.gbk
253434795345695122157Island text2.0665635.407324.0779Neighbours52BLASTNIslandViewer 3434795.gbk
263478630350293024301Island text1.6227333.800523.8884Neighbours11BLASTN+IslandViewer 3478630.gbk
273581114360707925966Island text1.5712235.909135.8783Neighbours42BLASTN+IslandViewer 3581114.gbk
283630884365818427301Island text1.725137.706740.0353Neighbours41BLASTNIslandViewer 3630884.gbk
293688000371059922600Island text1.8141335.767538.1781Neighbours41BLASTN+3688000.gbk
303712272373340821137Island text1.6586734.650126.274Neighbours41BLASTN+3712272.gbk
313756654*377548418831Island text1.5810333.69137.2762Neighbours52BLASTNIslandViewer 3756654.gbk
323870466392303252567Island text2.4980541.421644.2535Neighbours52BLASTN+IslandViewer 3870466.gbk
333934239*396254628308Island text1.993837.102637.5484Neighbours41BLASTNIslandViewer 3934239.gbk
344032668405509922432Island text2.6973739.725734.4232Neighbours52BLASTNIslandViewer 4032668.gbk
354195500423664541146Island text1.6687935.466844.002Neighbours52BLASTN+IslandViewer 4195500.gbk
364356865438177024906Island text2.3083643.512938.9938Neighbours52BLASTNIslandViewer 4356865.gbk
374423507444921825712Island text2.2751840.545633.2353Neighbours52BLASTNIslandViewer 4423507.gbk
384651532467620424673Island text1.9073838.405242.8365Neighbours41BLASTN+IslandViewer 4651532.gbk
394677965*469591417950Island text1.6525435.010349.3909Neighbours52BLASTN+IslandViewer 4677965.gbk
405160133519409633964Island text2.244241.820530.953Neighbours41BLASTN+IslandViewer 5160133.gbk
415397526543363336108Island text3.8529849.025842.8828Neighbours25BLASTNIslandViewer 5397526.gbk
425724000574609922100Island text1.9660337.116423.8592Neighbours52BLASTN+IslandViewer 5724000.gbk
435747721577159923879Island text1.9443243.279132.619Neighbours52BLASTN+IslandViewer 5747721.gbk
445801295*583324531951Island text2.0392837.606326.2372BLASTNIslandViewer 5801295.gbk
456013242*603721023969Island text1.6632934.240754.3937Neighbours52BLASTN+IslandViewer 6013242.gbk
466049340*607799328654Island text1.9612640.712944.3094Neighbours45BLASTNIslandViewer 6049340.gbk
476096345*612066624322Island text1.7662139.370742.9805Neighbours52BLASTNIslandViewer 6096345.gbk
486327428*635426926842Island text1.5494337.321850.0896Neighbours52BLASTNIslandViewer 6327428.gbk
496350079*637233822260Island text1.601937.673354.3885Neighbours52BLASTN+IslandViewer 6350079.gbk
506407370*643016222793Island text1.9926536.314424.4049Neighbours11BLASTN+IslandViewer 6407370.gbk
516461267*647977518509Island text1.6593936.237421.3942Neighbours41BLASTN+IslandViewer 6461267.gbk
526500059*654594145883Island text2.7386542.968837.4902Neighbours25BLASTN+IslandViewer 6500059.gbk
536647500667809930600Island text2.2216139.889830.6279Neighbours52BLASTNIslandViewer 6647500.gbk
546858465688089522431Island text1.9806138.142435.6276Neighbours52BLASTN+IslandViewer 6858465.gbk
556955479697592820450Island text1.9351937.360229.6605Neighbours52BLASTN+IslandViewer 6955479.gbk
566991163701668225520Island text1.7327638.144543.799Neighbours52BLASTN+6991163.gbk
577136956*718840751452Island text2.1304341.656830.3845Neighbours52BLASTN+IslandViewer 7136956.gbk