Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007644: Moorella thermoacetica ATCC 39073, complete genome

NCBI: NC_007644

Host Lineage: Moorella thermoacetica; Moorella; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Moorella thermoacetica, formerly Clostridium thermoaceticum, can grow on hydrogen and fix carbon dioxide or carbon monoxide with the production of acetate. It is found at the bottom of stagnant ponds and forms extremely heat-resistant spores.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
13229*2661523387Island text1.725836.025428.2362Neighbours22BLASTN3229.gbk
216122218971628495Island text2.7217845.508731.1337Neighbours22BLASTN+IslandViewer 161222.gbk
3280000*33909959100Island text2.1979938.797130.5914Neighbours22BLASTN+IslandViewer 280000.gbk
4362000*39425132252Island text1.7362334.641432.8075Neighbours22BLASTN+IslandViewer 362000.gbk
5416000*44601230013Island text3.2527344.004628.9539Neighbours22BLASTN+IslandViewer 416000.gbk
646918149623427054Island text2.4084341.521536.6858Neighbours316BLASTN+469181.gbk
7626992*69973472743Island text1.82537.472332.6678Neighbours22BLASTN+IslandViewer 626992.gbk
871147673022118746Island text1.4986532.131622.3566Neighbours22BLASTN+IslandViewer 711476.gbk
977937680501525640Island text2.0051838.463330.1007Neighbours22BLASTN PAI DB779376.gbk
101293701131609922399Island text1.6369938.144527.9815Neighbours221293701.gbk
111352794137309920306Island text1.5960334.664427.9462Neighbours316BLASTN1352794.gbk
121603696162590522210Island text1.6950533.839432.4779Neighbours22BLASTN1603696.gbk
131638083167008232000Island text2.6539543.068420.2386Neighbours22BLASTN+IslandViewer 1638083.gbk
141694879*171885823980Island text1.8795136.596930.3763Neighbours22BLASTN1694879.gbk
151847000*187125224253Island text1.5997730.830520.7333Neighbours316BLASTN+1847000.gbk
162099878212213022253Island text1.6466732.186335.2357Neighbours22BLASTN+2099878.gbk
172146622216561818997Island text1.6311434.186519.635Neighbours316BLASTN+2146622.gbk
182205599223465329055Island text2.1548540.063537.8152Neighbours22BLASTN2205599.gbk
192318855*234705128197Island text2.2035840.973633.8165Neighbours316BLASTN+IslandViewer 2318855.gbk
202452244248116728924Island text2.1326938.089733.7515Neighbours22BLASTN+IslandViewer 2452244.gbk