Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007643: Rhodospirillum rubrum ATCC 11170, complete genome

NCBI: NC_007643

Host Lineage: Rhodospirillum rubrum; Rhodospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: This bacterium can grow using carbon monoxide as the sole carbon and energy source and the cells contain a well characterized nitrogenase system that is post-translationally modified by ADP-ribosylation. Phototrophic bacterium. This organism is an anoxygenic phototrophic bacterium that does not produce oxygen, but instead produces extracellular elemental sulfur when harvesting light energy. The bacterium lacks the light harvesting complex 2 (LHC2) normally found in photosynthetic bacteria meaning it contains one of the simplest photosynthetic systems studied.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1185135*20908123947Island text2.0009123.330823.5744Neighbours11BLASTN+185135.gbk
2578808*60209923292Island text1.4580521.297417.2494Neighbours11BLASTN+578808.gbk
3791500*81271221213Island text1.594723.517524.999Neighbours11BLASTN+791500.gbk
4889755*93094641192Island text2.2384323.138626.2465Neighbours11BLASTN+IslandViewer 889755.gbk
595536297459919238Island text1.5597224.08825.0477Neighbours11BLASTN+IslandViewer 955362.gbk
61504758152909924342Island text1.9434225.639333.177Neighbours11BLASTN+IslandViewer 1504758.gbk
71781723*179959917877Island text1.4833221.254912.6507Neighbours11BLASTN+IslandViewer 1781723.gbk
82722265*275282330559Island text2.2233325.107824.2638Neighbours11BLASTN+2722265.gbk
93799425*383775538331Island text2.9575132.500228.7769Neighbours11BLASTN+IslandViewer 3799425.gbk
104294818*431506320246Island text1.6559822.18322.9179Neighbours11BLASTNIslandViewer 4294818.gbk