Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007633: Mycoplasma capricolum subsp. capricolum ATCC 27343, complete

NCBI: NC_007633

Host Lineage: Mycoplasma capricolum; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Pathogen of goats. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
177860*10078222923Island text1.6715413.487622.3314Neighbours21BLASTN77860.gbk
2253143*27396420822Island text1.612313.06246.89487Neighbours21BLASTN253143.gbk
3408000*43026322264Island text1.9748112.34817.2067Neighbours21BLASTNIslandViewer 408000.gbk
4446899*46595419056Island text1.5868212.454421.5637Neighbours21BLASTNIslandViewer 446899.gbk
5696604*72259525992Island text1.8345213.561921.5061Neighbours21BLASTN+IslandViewer 696604.gbk
6790881*82774836868Island text2.1722115.706625.2954Neighbours21BLASTN+790881.gbk
7952728*97957526848Island text4.5861416.247721.4216Neighbours21BLASTN+IslandViewer 952728.gbk
8988000*101399926000Island text3.5504911.861617.627Neighbours21BLASTN988000.gbk