Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007626: Magnetospirillum magneticum AMB-1, complete genome

NCBI: NC_007626

Host Lineage: Magnetospirillum magneticum; Magnetospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: This organism was isolated from pond water in Tokyo, Japan. Magnetic particles from Magnetospirillum magneticum have been used in DNA and RNA isolation procedures. The typical habitat of Magnetospirillum consists of shallow fresh water and sediments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1689259422825304Island text1.7671524.285631.7091Neighbours11BLASTNIslandViewer 68925.gbk
241806744309925033Island text2.7425432.450520.2863Neighbours11BLASTN+IslandViewer 418067.gbk
350653252963323102Island text2.2660627.806120.8649Neighbours11BLASTN+IslandViewer 506532.gbk
469792672542027495Island text2.5713530.126325.6841Neighbours11BLASTN+IslandViewer 697926.gbk
5959684*100429644613Island text2.852929.135722.3339Neighbours11BLASTN+IslandViewer 959684.gbk
61038214107309634883Island text2.6708235.280922.7654Neighbours11BLASTN+IslandViewer 1038214.gbk
71091000111043819439Island text1.9987626.445521.0785Neighbours11BLASTN+IslandViewer 1091000.gbk
81202704122614123438Island text1.5243223.966420.2095Neighbours11BLASTN+IslandViewer 1202704.gbk
91746475*178760841134Island text3.5285338.884126.1062Neighbours11BLASTNIslandViewer 1746475.gbk
101820074*184505324980Island text3.1228724.761730.434Neighbours11BLASTNIslandViewer 1820074.gbk
111863747188159917853Island text1.5820623.753624.8386Neighbours11BLASTN+IslandViewer 1863747.gbk
122204767226720262436Island text2.5395432.765321.3109Neighbours11BLASTN+IslandViewer 2204767.gbk
132283793*230659922807Island text1.8539434.270249.3359Neighbours11BLASTN+IslandViewer 2283793.gbk
142354260240935855099Island text3.4741339.887422.8978Neighbours11BLASTNIslandViewer 2354260.gbk
153393940*344229748358Island text2.4094728.221621.015Neighbours11BLASTN+IslandViewer 3393940.gbk
163522265361842896164Island text2.290428.280821.1083Neighbours11BLASTN+IslandViewer PAI DB3522265.gbk
173996000*401964723648Island text1.6425423.720228.7002Neighbours11BLASTN+IslandViewer 3996000.gbk
184038054406859930546Island text2.7871132.35525.537Neighbours11BLASTN+IslandViewer 4038054.gbk
194135961*417095634996Island text2.6696331.275325.8257Neighbours11BLASTN+IslandViewer 4135961.gbk
204688777471078422008Island text2.1465330.205623.4005Neighbours11BLASTN+IslandViewer 4688777.gbk