Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007622: Staphylococcus aureus RF122, complete genome

NCBI: NC_007622

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a common strain associated with mastitis in cattle. This organism is responsible for several hundred million dollars worth of annual economic loss to animal production each year. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116000*3563419635Island text1.5730519.361828.3896Neighbours21BLASTN16000.gbk
227167329431622644Island text1.7050519.528237.5503Neighbours21BLASTN+271673.gbk
341600043709921100Island text3.2343818.725329.2423Neighbours21BLASTN PAI DB416000.gbk
4537195*55691619722Island text1.7354518.285926.7146Neighbours21BLASTN537195.gbk
556750058887821379Island text1.5939620.590636.9998Neighbours21BLASTN567500.gbk
61214629*123355918931Island text1.549418.36731.7456Neighbours21BLASTN1214629.gbk
71397407142300525599Island text1.625424.248438.1685Neighbours21BLASTN+1397407.gbk
81558753*157743218680Island text1.639718.585830.0707Neighbours21BLASTN1558753.gbk
91751500*177342921930Island text1.8374120.045733.6529Neighbours21BLASTN+1751500.gbk
101842000*189289150892Island text2.411620.63538.3763Neighbours21BLASTN+IslandViewer PAI DB1842000.gbk
112117188*213617218985Island text1.5160518.926330.1925Neighbours21BLASTN2117188.gbk
122239799*227094331145Island text1.7106423.330732.0109Neighbours21BLASTN+2239799.gbk
132399347242439425048Island text1.7979620.185331.265Neighbours21BLASTN+2399347.gbk
142501562252460723046Island text1.5937719.655931.6847Neighbours21BLASTN+2501562.gbk