Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007577: Prochlorococcus marinus str. MIT 9312, complete genome

NCBI: NC_007577

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: This strain was isolated by flow cytometry from water collected from the Gulf Stream in the north Atlantic Ocean. Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1353755*37886925115Island text1.6379922.204819.1203Neighbours21BLASTN+IslandViewer 353755.gbk
250344053261829179Island text1.7797521.979820.9506Neighbours21BLASTN503440.gbk
31047000*106734620347Island text1.5471616.141818.5954Neighbours21BLASTNIslandViewer 1047000.gbk
41458657*148585427198Island text1.882520.238327.4433Neighbours21BLASTN1458657.gbk
51517000*154689729898Island text1.770619.814226.3469Neighbours21BLASTN1517000.gbk