Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007575: Sulfurimonas denitrificans DSM 1251, complete genome

NCBI: NC_007575

Host Lineage: Sulfurimonas denitrificans; Sulfurimonas; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This organsim is a sulfur-oxidizing bacterium isolated isolated from estuarine mud in the Netherlands. Sulfur-oxidizing bacterium. Sulfurimonas denitrificans, formerly Thiomicrospira denitrificans, is a denitrifying chemolithoautotroph that uses sulfide or thiosulfate and nitrate or nitrite as the electron donor and acceptor. This organism has been identified in hydrothermal vent areas and from oilfields and may play a role in the cycling of sulfur in these environments.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119209521009918005Island text1.746416.245113.3634Neighbours21BLASTN192095.gbk
2319119*34236623248Island text1.458117.187526.1481Neighbours21BLASTN319119.gbk
360125662222620971Island text1.69917.088222.7403Neighbours21BLASTN601256.gbk
482722285310325882Island text1.6931318.754727.836NeighboursBLASTN+827222.gbk
5973559*99259919041Island text1.518816.61827.2293Neighbours21BLASTN+973559.gbk
61484305150272618422Island text1.5635316.321125.7035Neighbours21BLASTN1484305.gbk
71663088*168616723080Island text2.0543817.588818.2836Neighbours21BLASTN+1663088.gbk
81694877*171700722131Island text1.6831420.778429.505Neighbours21BLASTN+IslandViewer 1694877.gbk