Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007520: Thiomicrospira crunogena XCL-2, complete genome

NCBI: NC_007520

Host Lineage: Thiomicrospira crunogena; Thiomicrospira; Piscirickettsiaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: This organism is a colorless sulfur-oxidizing bacterium isolated from a deep-sea hydrothermal vent. Sulfur-oxidizing bacterium. Thiomicrospira crunogena is a chemoautotroph commonly isolated from deep sea and shallow-water hydrothermal vents. This organism uses the oxidation of reduced sulfur compounds (thiosulfate, sulfide and sulfur) to generate the energy necessary to fix carbon and plays an important role in the cycling of sulfur in the marine environment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140762743034622720Island text1.4937725.802523.4011Neighbours21BLASTN+IslandViewer 407627.gbk
2903799*92711823320Island text1.4502227.717727.6038Neighbours21BLASTN+903799.gbk
31627978*164652818551Island text1.6671435.29349.6873Neighbours21BLASTN1627978.gbk
41940120*196189521776Island text1.53331.01943.231Neighbours320BLASTN+1940120.gbk
52128178*215364125464Island text1.6403431.649845.6107Neighbours42BLASTN2128178.gbk
62305610232437818769Island text1.5606725.176334.048Neighbours21BLASTN2305610.gbk
72391675241470023026Island text1.5609426.136951.8882Neighbours320BLASTN2391675.gbk