Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007516: Synechococcus sp. CC9605, complete genome

NCBI: NC_007516

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: Isolated off the coast of California.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1124486*16330438819Island text6.1502154.926123.7317Neighbours13BLASTNIslandViewer 124486.gbk
2193498*22327129774Island text4.4273250.075328.1606Neighbours11BLASTN+IslandViewer 193498.gbk
3347824*37119523372Island text3.0604644.069930.5011Neighbours11BLASTN+347824.gbk
4413159*44618333025Island text2.5670642.237928.4131Neighbours13BLASTNIslandViewer 413159.gbk
553250055441121912Island text2.3867637.858128.7239Neighbours11BLASTN+IslandViewer 532500.gbk
6731193*75875727565Island text2.5029240.366127.0049Neighbours11BLASTNIslandViewer 731193.gbk
7774489*81616441676Island text4.5325555.332727.0779Neighbours13BLASTNIslandViewer 774489.gbk
8825491*84383418344Island text2.4863435.477517.6635Neighbours11BLASTNIslandViewer 825491.gbk
9891681*91532523645Island text1.8492138.828722.4418Neighbours11BLASTN+IslandViewer 891681.gbk
101086948*111341126464Island text4.2338648.469944.1159Neighbours13BLASTNIslandViewer 1086948.gbk
111283210*130373020521Island text2.3118935.746423.6275Neighbours11BLASTNIslandViewer 1283210.gbk
121323105134891925815Island text2.5185144.05726.2781Neighbours11BLASTN+IslandViewer 1323105.gbk
131439537*147374534209Island text3.419347.975233.8911Neighbours13BLASTN+IslandViewer 1439537.gbk
141561166159795036785Island text2.3507640.236430.9856Neighbours13BLASTN+IslandViewer 1561166.gbk
151618033164737929347Island text3.0850150.456926.4841Neighbours13BLASTN+IslandViewer 1618033.gbk
161810834*183808227249Island text3.2652447.15638.6674Neighbours11BLASTN+IslandViewer 1810834.gbk
171847745186809920355Island text2.317736.698738.2309Neighbours11BLASTN+1847745.gbk
181947214*197131324100Island text1.9692233.46332.6349Neighbours11BLASTN+IslandViewer 1947214.gbk
191974500*199561621117Island text2.2409636.830543.5106Neighbours11BLASTNIslandViewer 1974500.gbk
202037477*206692129445Island text3.0842742.487327.6187Neighbours13BLASTN+IslandViewer 2037477.gbk
212090901211526424364Island text1.7932930.575147.6733Neighbours11BLASTN2090901.gbk
222277910*233010252193Island text3.7602150.509532.31Neighbours13BLASTNIslandViewer 2277910.gbk
232383097*240925926163Island text3.2478247.02736.4413Neighbours11BLASTN+IslandViewer 2383097.gbk
242420264244528825025Island text2.5755140.456840.0179Neighbours11BLASTN+IslandViewer 2420264.gbk