Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007514: Chlorobium chlorochromatii CaD3, complete genome

NCBI: NC_007514

Host Lineage: Chlorobium chlorochromatii; Chlorobium; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Chlorobium chlorochromatii CaD3 was isolated from a phototrophic consortia obtained from a freshwater lake in Germany. Chlorobium chlorochromatii is an green sulfur bacterium isolated from low temperature anaerobic fresh water habitats. This organism grows as part of a phototrophic consortium which consists of a colorless central bacterium surrounded by chlorosome-containing green sulfur epibionts. This organism is able to be grown in pure culture therefore is not an obligate symbiont. This organism is an obligate anaerobic phototroph able to fix nitrogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1335085*35739322309Island text2.1877829.79922.9976Neighbours21BLASTN335085.gbk
290456594230337739Island text2.0297329.425837.1474Neighbours21BLASTN+IslandViewer 904565.gbk
31475323149832423002Island text2.3144727.431918.8513Neighbours21BLASTN+1475323.gbk
41840971*186546324493Island text1.7849527.924415.2089Neighbours21BLASTN+1840971.gbk
51936812*195709920288Island text2.038429.379211.6894Neighbours21BLASTN1936812.gbk