Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007513: Synechococcus sp. CC9902, complete genome

NCBI: NC_007513

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain was isolated from coastal seawater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
175197*12959954403Island text10.091658.334229.7033Neighbours21BLASTNIslandViewer 75197.gbk
2438438*46759929162Island text2.0897841.787427.2076Neighbours13BLASTNIslandViewer 438438.gbk
3513806*53756623761Island text2.4481841.785737.6806Neighbours13BLASTNIslandViewer 513806.gbk
4632884*65694724064Island text2.3744443.232133.6966Neighbours13BLASTN+632884.gbk
5728324*75408525762Island text1.717643.801734.2624Neighbours13BLASTN+728324.gbk
6942500*98279040291Island text2.0195838.833136.9234Neighbours13BLASTN942500.gbk
7987969*101809930131Island text2.2675740.857238.6005Neighbours13BLASTN+ PAI DB987969.gbk
81126914*115240425491Island text1.8244538.626120.6417Neighbours13BLASTN+1126914.gbk
91159497118310323607Island text2.1692740.503424.0087Neighbours13BLASTN1159497.gbk
101311957*134932937373Island text2.1635938.757724.8979Neighbours13BLASTN+IslandViewer 1311957.gbk
111388641*142459935959Island text2.1485941.55226.7864Neighbours13BLASTN+IslandViewer 1388641.gbk
121503955*152946525511Island text2.9421342.459742.643Neighbours13BLASTN+IslandViewer 1503955.gbk
131721359*174344122083Island text1.8709937.552132.2806Neighbours13BLASTN1721359.gbk
141764739*178968624948Island text1.7349736.12952.1501Neighbours11BLASTN1764739.gbk
151807184183164924466Island text1.8569839.413333.1907Neighbours13BLASTNIslandViewer 1807184.gbk
161900000*192383823839Island text2.3575342.338237.5671Neighbours13BLASTN+IslandViewer 1900000.gbk