Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007512: Pelodictyon luteolum DSM 273, complete genome

NCBI: NC_007512

Host Lineage: Pelodictyon luteolum; Pelodictyon; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Pelodictyon luteolum (also called Chlorobium luteolum) is a phototropic green sulfur bacteria that inhabits hydrogen sulfide containing water and freshwater mud, brackish waters and marine environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
177197581463242658Island text1.701630.060251.0252Neighbours33BLASTN+771975.gbk
286550089856833069Island text1.7560932.663442.839Neighbours14BLASTN+IslandViewer 865500.gbk
3944941100309958159Island text1.7822131.126537.4821Neighbours33BLASTN+IslandViewer 944941.gbk
41162949118975726809Island text1.8087133.375422.333Neighbours33BLASTN+IslandViewer 1162949.gbk
51459685148211322429Island text1.7733632.957831.5282Neighbours11BLASTN+IslandViewer 1459685.gbk
61539095157286533771Island text1.703383041.7408Neighbours141539095.gbk
72024880*207013145252Island text1.8255928.584950.6763Neighbours14BLASTN+IslandViewer 2024880.gbk