Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007511: Burkholderia sp. 383 chromosome 2, complete sequence

NCBI: NC_007511

Host Lineage: Burkholderia lata; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from a forest soil in Trinidad in 1958.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
171949373920719715Island text1.5002319.917324.3635Neighbours11BLASTN+719493.gbk
21094050112124627197Island text1.9392525.034926.5915Neighbours11BLASTNIslandViewer PAI DB1094050.gbk
31147696118468036985Island text1.8728123.569825.1682Neighbours11BLASTN+IslandViewer 1147696.gbk
41300978132645425477Island text2.2392627.728526.3235Neighbours11BLASTN+IslandViewer 1300978.gbk
51681764*170409922336Island text1.367419.8212.4558Neighbours11BLASTNIslandViewer 1681764.gbk
61780500180270922210Island text1.7309321.613624.5164Neighbours11BLASTN+IslandViewer PAI DB1780500.gbk
72072838209971926882Island text2.4959732.375140.0031Neighbours11BLASTNIslandViewer 2072838.gbk
83080849309968718839Island text1.5131914.14158.73127Neighbours11BLASTN3080849.gbk
93103999313038426386Island text2.900527.822830.2731Neighbours11BLASTN+IslandViewer 3103999.gbk
103371319339850027182Island text2.1199324.303522.6078Neighbours11BLASTN+IslandViewer 3371319.gbk
113512100353789225793Island text2.0120520.267115.6369Neighbours11BLASTN+IslandViewer 3512100.gbk