Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007510: Burkholderia sp. 383 chromosome 1, complete sequence

NCBI: NC_007510

Host Lineage: Burkholderia lata; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from a forest soil in Trinidad in 1958.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140984345009940257Island text1.517221.026828.5427Neighbours11BLASTN+IslandViewer PAI DB409843.gbk
2759905*79524835344Island text3.1842838.53135.5327Neighbours11BLASTN+IslandViewer PAI DB759905.gbk
391341193515721747Island text1.647821.143919.7565Neighbours11BLASTN+IslandViewer 913411.gbk
4943068*96450321436Island text1.7111620.380923.0209Neighbours11BLASTN+IslandViewer 943068.gbk
5973828*99616822341Island text1.7166118.105527.1531Neighbours11BLASTN+IslandViewer 973828.gbk
61921251195127630026Island text1.712721.65321.6514Neighbours11BLASTN+IslandViewer 1921251.gbk
71959883201803458152Island text1.574218.659819.3285Neighbours11BLASTN+IslandViewer 1959883.gbk
82284000230620022201Island text1.3730121.285318.0899Neighbours11BLASTN+2284000.gbk
92805121282621621096Island text1.7067718.914222.1545Neighbours11BLASTN+IslandViewer 2805121.gbk
103340008337541735410Island text2.7668230.844328.6527Neighbours11BLASTN+IslandViewer 3340008.gbk