Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007509: Burkholderia sp. 383 chromosome 3, complete sequence

NCBI: NC_007509

Host Lineage: Burkholderia lata; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from a forest soil in Trinidad in 1958.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136686033156664Island text2.0322324.100427.6867Neighbours11BLASTN+IslandViewer 3668.gbk
27195411100139048Island text2.1744828.037826.4998Neighbours11BLASTN+IslandViewer 71954.gbk
330934833693727590Island text1.5136522.932923.2062Neighbours11BLASTNIslandViewer PAI DB309348.gbk
464400066633222333Island text1.5950521.321714.2283Neighbours11BLASTN+644000.gbk
5832473*85564123169Island text1.5996820.478216.534Neighbours11BLASTN+IslandViewer 832473.gbk
697150099116619667Island text1.5009920.874312.6715Neighbours11BLASTNIslandViewer 971500.gbk
71043602106728723686Island text1.609921.443318.7599Neighbours11BLASTN+IslandViewer 1043602.gbk
81383013140599922987Island text1.5244519.532324.0123Neighbours11BLASTN+1383013.gbk