Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007508: Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome

NCBI: NC_007508

Host Lineage: Xanthomonas euvesicatoria; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Plant pathogen. This organism can be divided into three strains, pepper race 1 which causes disease in all peppers, pepper race 2 which causes a limited disease in peppers that have a specific resistance gene, and a tomato strain which causes a limited disease in all peppers, Xanthomonas campestris pv. vesicatoria strain 85-10 is a pepper race 2 strain.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1649559213227178Island text2.2311724.314526.4902Neighbours11BLASTN+IslandViewer 64955.gbk
214189117036628476Island text1.8417623.837823.1706Neighbours11BLASTN+IslandViewer 141891.gbk
3237771*27801540245Island text2.5815630.38621.1918Neighbours11BLASTN+IslandViewer 237771.gbk
447979950274922951Island text1.6946119.072225.1655Neighbours11BLASTN+IslandViewer PAI DB479799.gbk
557000058799217993Island text1.5126520.774621.312Neighbours11BLASTN570000.gbk
668904671040421359Island text1.6357520.140718.7294Neighbours11BLASTN+IslandViewer 689046.gbk
71221500*126063139132Island text1.889824.36518.7321Neighbours11BLASTN+IslandViewer 1221500.gbk
81324000134802224023Island text1.5221324.051628.0363Neighbours11BLASTN1324000.gbk
91446526*147198625461Island text1.8153220.109722.7224Neighbours11BLASTN+IslandViewer 1446526.gbk
101517393153857521183Island text1.5647723.16718.9731Neighbours11BLASTN+IslandViewer 1517393.gbk
112072738211001837281Island text2.008723.771928.254Neighbours11BLASTN+IslandViewer 2072738.gbk
122234080*225476820689Island text1.5998818.604126.9176Neighbours11BLASTN+IslandViewer 2234080.gbk
132277640*230096223323Island text1.4207219.394517.7366Neighbours11BLASTN PAI DB2277640.gbk
142756945277931722373Island text1.64520.055425.0305Neighbours11BLASTN+2756945.gbk
152783443280367620234Island text1.5350918.133924.531Neighbours11BLASTN+IslandViewer 2783443.gbk
162941889*296435422466Island text1.4819618.695325.466Neighbours11BLASTN+IslandViewer 2941889.gbk
173034718*305615521438Island text1.5686918.859430.039Neighbours11BLASTN+IslandViewer 3034718.gbk
183065621309125825638Island text1.7832125.004436.208Neighbours11BLASTN+IslandViewer 3065621.gbk
193183631322068237052Island text1.9198322.225325.0027Neighbours11BLASTN+IslandViewer 3183631.gbk
203835000*385851223513Island text1.6936919.854822.3079Neighbours11BLASTN+IslandViewer 3835000.gbk
213865000390220337204Island text1.9752123.096722.3023Neighbours11BLASTN+IslandViewer 3865000.gbk
223925445*394953524091Island text1.4757920.051127.6526Neighbours11BLASTN3925445.gbk
234067862409485926998Island text1.9016220.738829.7631Neighbours11BLASTNIslandViewer 4067862.gbk
244283750*431638632637Island text1.7336623.706626.9871Neighbours11BLASTN+IslandViewer 4283750.gbk
254476726*449836521640Island text1.8332220.087516.1908Neighbours11BLASTN+IslandViewer 4476726.gbk
264593446*461871425269Island text2.7677926.016931.7006Neighbours11BLASTN+4593446.gbk
274765751478898723237Island text1.6294519.931523.3514Neighbours11BLASTN+IslandViewer 4765751.gbk
285093365511609922735Island text1.4791419.218118.699Neighbours11BLASTNIslandViewer 5093365.gbk