Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007503: Carboxydothermus hydrogenoformans Z-2901, complete genome

NCBI: NC_007503

Host Lineage: Carboxydothermus hydrogenoformans; Carboxydothermus; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: This strain was isolated from a hot swamp from Kunashir Island, Russia. Carbon monoxide utilizing bacterium. This organism is extremely thermophilic and can utilize carbon monoxide as the sole carbon and energy source under anaerobic conditions with the production of carbon dioxide and hydrogen gas.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
186166888414522478Island text2.5357626.038827.6363Neighbours21BLASTN861668.gbk
291980894265222845Island text2.8215525.054724.595Neighbours21919808.gbk
31047577107025322677Island text1.4685725.15223.9737Neighbours21BLASTN1047577.gbk
41111457116884057384Island text1.8096126.873335.2535Neighbours21BLASTN+IslandViewer 1111457.gbk
51383255*140917225918Island text2.1713732.011646.9525Neighbours22BLASTN1383255.gbk
61486000150532419325Island text1.6008925.275642.1215Neighbours337BLASTN+IslandViewer 1486000.gbk
71534162155568921528Island text1.900526.318430.2189Neighbours21BLASTN1534162.gbk
81680513*170243021918Island text2.098925.709619.9892Neighbours21BLASTN1680513.gbk
91885571*191125825688Island text2.0376931.266443.8182Neighbours22BLASTN+1885571.gbk
102010858*203555424697Island text2.1853130.774545.6263Neighbours22BLASTN+2010858.gbk
112063451*208564322193Island text1.6282627.622450.0805Neighbours377BLASTN2063451.gbk
122098980*212712728148Island text2.275232.702248.0973Neighbours22BLASTN+2098980.gbk
132243902226305519154Island text1.6200424.562327.5673Neighbours21BLASTN+IslandViewer 2243902.gbk
142338110*237510836999Island text1.7779129.794130.6848Neighbours21BLASTN+IslandViewer 2338110.gbk