Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007498: Pelobacter carbinolicus DSM 2380, complete genome

NCBI: NC_007498

Host Lineage: Pelobacter carbinolicus; Pelobacter; Pelobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Pelobacter carbinolicus DSM 2380 was isolated from mud in Venice, Italy. Iron- and sulfur-reducing bacterium. Pelobacter carbinolicus is commonly isolated from marine and freshwater sediments, and sewage sludge. This organism can make up a significant portion of the anaerobic microbial community in these environments. Pelobacter carbinolicus is also able to grow using iron and sulfur as terminal electron acceptors. This organism is closely related to the sulfur-reducing Desulfuromonas spp. and iron-reducing Geobacter spp..



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113444216276328322Island text2.5904345.105821.6615Neighbours23BLASTNIslandViewer 134442.gbk
219781022290125092Island text2.1050639.748229.0752Neighbours11BLASTNIslandViewer 197810.gbk
335748438618028697Island text2.3101843.119230.722Neighbours14BLASTNIslandViewer 357484.gbk
491969794610526409Island text1.8860732.951630.1857Neighbours23BLASTN+IslandViewer 919697.gbk
51072112109809925988Island text1.9105536.3333.0778Neighbours11BLASTN+IslandViewer 1072112.gbk
61148249*117610427856Island text2.2106341.218130.8933Neighbours14BLASTN+IslandViewer 1148249.gbk
71491223*150989718675Island text1.5394931.678645.4166Neighbours14BLASTN1491223.gbk
81562270158456022291Island text1.5358132.941725.0183Neighbours11BLASTN+1562270.gbk
91611986163200720022Island text1.6604731.175528.6657Neighbours11BLASTN+IslandViewer 1611986.gbk
101666242*169184325602Island text1.4609830.976450.8223Neighbours14BLASTN1666242.gbk
111774859179723822380Island text1.6156331.432636.4367Neighbours23BLASTN1774859.gbk
121848437186889420458Island text1.5206233.815732.6105Neighbours23BLASTNIslandViewer 1848437.gbk
132046935206920422270Island text1.6530433.542129.4389Neighbours33BLASTN2046935.gbk
142087811212235934549Island text4.5671248.651237.661Neighbours23BLASTN+IslandViewer 2087811.gbk
152475781250058424804Island text1.7691836.988451.2686Neighbours23BLASTN+2475781.gbk
162618131*263754319413Island text1.8389231.24742.8615Neighbours14BLASTN+2618131.gbk
172638671*265853319863Island text1.4982337.123136.2346Neighbours11BLASTN+IslandViewer 2638671.gbk
183085511*310809922589Island text1.4636533.602928.7002Neighbours11BLASTN+IslandViewer 3085511.gbk
193399478342153922062Island text1.6450434.115830.3782Neighbours11BLASTNIslandViewer 3399478.gbk
203540945355959918655Island text1.610232.338324.2995Neighbours33BLASTN+IslandViewer 3540945.gbk
213655304*367749922196Island text1.5425730.757543.0503Neighbours33BLASTNIslandViewer 3655304.gbk