Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007494: Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence

NCBI: NC_007494

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Isolated from deep lakes and stagnate waters. A photosynthetic bacterium useful in bioremediation. Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2004420044Island text2.4954518.90532.105Neighbours11BLASTN1.gbk
227084*4533018247Island text2.4369716.901821.5191Neighbours11BLASTN+IslandViewer 27084.gbk
3621673*64650524833Island text1.739316.789315.4891Neighbours11BLASTNIslandViewer 621673.gbk
471452574074926225Island text1.5741617.670816.4636Neighbours11BLASTN+IslandViewer 714525.gbk
573940376864729245Island text3.6172928.166822.2832Neighbours11BLASTN+IslandViewer 739403.gbk
686790189976631866Island text3.1592627.827120.2392Neighbours11BLASTN+IslandViewer 867901.gbk