Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007484: Nitrosococcus oceani ATCC 19707, complete genome

NCBI: NC_007484

Host Lineage: Nitrosococcus oceani; Nitrosococcus; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Found in marine or saline environments. Ammonia-oxidizing bacterium. This species, along with Nitrosococcus halophilus, are ammonia-oxidizing bacteria found within the gamma subdivision of Proteobacteria. This organism has two surface layers, and produces a central stack of intracytoplasmic membranes (flattened vesicles).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17941310239722985Island text1.4284334.058922.8712Neighbours310BLASTN79413.gbk
213089615417823283Island text2.2141235.615322.5904Neighbours25BLASTN130896.gbk
3266594*28515018557Island text1.5032734.435832.5496Neighbours310BLASTN+266594.gbk
429376331745623694Island text1.5651332.970634.4987Neighbours310BLASTN+293763.gbk
549578452622030437Island text1.6194733.548728.9293Neighbours310BLASTN495784.gbk
658010660029820193Island text1.6897231.794132.5618Neighbours310BLASTN580106.gbk
766787969009922221Island text1.4518942.272622.8042Neighbours11BLASTN+IslandViewer 667879.gbk
8755058*77982324766Island text1.4864133.669743.2148Neighbours310BLASTN+IslandViewer 755058.gbk
988234190178219442Island text1.8022433.255152.9297Neighbours310BLASTN882341.gbk
101229899*125251522617Island text1.7180932.420432.2451Neighbours310BLASTN1229899.gbk
111355880137576719888Island text1.8679234.061346.6211Neighbours310BLASTN1355880.gbk
121671835169794126107Island text1.4660734.545245.3953Neighbours14BLASTN+1671835.gbk
131694738171826123524Island text1.9296633.879522.2543Neighbours310BLASTN1694738.gbk
141823751*186794644196Island text1.9512234.420438.6393Neighbours310BLASTN+1823751.gbk
151975322*199809922778Island text1.5164536.229342.3986Neighbours310BLASTN1975322.gbk
162045500206659921100Island text1.7976433.38219.6629NeighboursBLASTN PAI DB2045500.gbk
172222474224424721774Island text1.7135334.568847.5158Neighbours310BLASTN+2222474.gbk
182392739241952126783Island text1.7890838.321147.3354Neighbours310BLASTN+2392739.gbk
192665195*268309917905Island text1.5840932.62453.9758Neighbours310BLASTN2665195.gbk
202746078276698620909Island text1.5336833.505627.0648Neighbours310BLASTN+IslandViewer 2746078.gbk
212893878291586821991Island text1.7057934.261653.6633Neighbours310BLASTN2893878.gbk
223035068*305935824291Island text1.47136.691438.1532Neighbours310BLASTN+IslandViewer 3035068.gbk
233071329309386922541Island text1.5953238.120135.5677Neighbours14BLASTN3071329.gbk
243231937325059618660Island text1.6851732.891549.93Neighbours310BLASTN3231937.gbk
253358000338148123482Island text1.502334.241220.4166Neighbours310BLASTN3358000.gbk
263429140*345349224353Island text1.5530532.125547.8012Neighbours310BLASTN3429140.gbk