Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007435: Burkholderia pseudomallei 1710b chromosome II, complete sequence

NCBI: NC_007435

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1191821*22269530875Island text1.5923817.51715.7397Neighbours11BLASTN+IslandViewer 191821.gbk
230593732993724001Island text1.7324324.83216.2493Neighbours11BLASTN+IslandViewer 305937.gbk
356643659095324518Island text1.7754527.063327.5323Neighbours11BLASTNIslandViewer PAI DB566436.gbk
41077792*110044222651Island text1.5093521.960118.1204Neighbours11BLASTN1077792.gbk
51446916149170044785Island text1.7182322.421323.8592Neighbours11BLASTN+IslandViewer 1446916.gbk
61825741*184876423024Island text1.524522.750528.7428Neighbours11BLASTN+1825741.gbk
71914375195826743893Island text2.0717421.534721.6314Neighbours11BLASTN+ PAI DB1914375.gbk
81981164201096229799Island text2.131823.816231.2538Neighbours11BLASTN+IslandViewer PAI DB1981164.gbk
92352954*238639233439Island text1.6549217.357711.6823Neighbours11BLASTN+2352954.gbk
102701242273492033679Island text3.2134631.768426.9548Neighbours11BLASTN+IslandViewer 2701242.gbk