Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007434: Burkholderia pseudomallei 1710b chromosome I, complete sequence

NCBI: NC_007434

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1111607*13392422318Island text1.7930924.762926.2045Neighbours11BLASTN+IslandViewer 111607.gbk
278850080659718098Island text1.7963417.366915.9946Neighbours11BLASTN+IslandViewer 788500.gbk
31001514102437922866Island text1.5298625.772123.6691Neighbours11BLASTN+IslandViewer 1001514.gbk
41322500135459932100Island text2.3972527.754922.1771NeighboursBLASTN+IslandViewer 1322500.gbk
51712000*180122589226Island text2.1396323.959229.452Neighbours11BLASTN+IslandViewer 1712000.gbk
61809946*187124661301Island text2.6035624.55229.1699Neighbours11BLASTN+IslandViewer 1809946.gbk
71923000195531232313Island text2.7732133.847542.5282Neighbours11BLASTN+IslandViewer 1923000.gbk
82290934231209021157Island text1.5607919.641717.294Neighbours11BLASTN+IslandViewer 2290934.gbk
92386036*240759921564Island text1.6452323.041818.8542Neighbours11BLASTN+IslandViewer 2386036.gbk
102424884244820923326Island text1.7212322.644412.78Neighbours11BLASTN+IslandViewer 2424884.gbk
112449721247743327713Island text1.7040723.231826.3801Neighbours11BLASTN+IslandViewer 2449721.gbk
122810548283335822811Island text1.7548622.902520.7624Neighbours11BLASTN+IslandViewer 2810548.gbk
133452985347302220038Island text1.4734519.722833.3658Neighbours11BLASTN+IslandViewer 3452985.gbk
143588081*362652838448Island text2.0158225.881634.0157Neighbours11BLASTNIslandViewer PAI DB3588081.gbk
153973145401522642082Island text2.4525126.066623.1021Neighbours11BLASTN+IslandViewer 3973145.gbk