Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007404: Thiobacillus denitrificans ATCC 25259, complete genome

NCBI: NC_007404

Host Lineage: Thiobacillus denitrificans; Thiobacillus; Hydrogenophilaceae; Hydrogenophilales; Proteobacteria; Bacteria

General Information: This organism was originally isolated from soil from Texas, USA. Iron- and sulfur-oxidizing bacterium. This organism was isolated from a biofilm obtained from a municipal wastewater treatment facility. It has subsequently been found in soil, mud, both freshwater and marine sediment, and industrial wastewater. It is a member of the beta proteobacteria and an obligate chemolithoautotroph.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135976438550125738Island text1.5288418.026521.785Neighbours11BLASTN+IslandViewer 359764.gbk
238782741112623300Island text1.74824.92119.2593Neighbours11BLASTN+IslandViewer 387827.gbk
3974461101843943979Island text2.2183724.288126.6984Neighbours11BLASTN+IslandViewer 974461.gbk
41126756114893922184Island text1.589121.420522.4403Neighbours11BLASTN+IslandViewer 1126756.gbk
51260500128123420735Island text1.5468321.263424.7972Neighbours11BLASTN+IslandViewer 1260500.gbk
61388049141186723819Island text2.3609826.938926.7065Neighbours11BLASTN+IslandViewer 1388049.gbk
71570000159185021851Island text1.700322.689723.6285Neighbours11BLASTNIslandViewer 1570000.gbk
81776147*179878922643Island text1.7050824.339321.5725Neighbours11BLASTN+IslandViewer 1776147.gbk
91964935*200068635752Island text2.1823424.66628.7149Neighbours11BLASTN+IslandViewer 1964935.gbk
102048000206896120962Island text1.6544319.336118.8257Neighbours11BLASTN2048000.gbk
112743877277508731211Island text2.0814223.800932.8696Neighbours11BLASTNIslandViewer 2743877.gbk