Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007355: Methanosarcina barkeri str. fusaro chromosome 1, complete sequence

NCBI: NC_007355

Host Lineage: Methanosarcina barkeri; Methanosarcina; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Methanosarcina barkeri strain Fusaro was isolated from mud samples taken from the freshwater lake, Lago del Fusaro near Naples, Italy. This organism is a strictly anaerobic, non-motile, methane-producing archaeon and has been found in marine mud, rumens of ungulates, lagoons polluted with animal waste and sludge from anaerobic sewage digestors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1100178*12754727370Island text2.0186831.113742.1362Neighbours21BLASTN100178.gbk
249976452359923836Island text2.1397733.047138.9993Neighbours21BLASTN499764.gbk
3544796*56309918304Island text1.5436929.553722.2591Neighbours21BLASTN+IslandViewer 544796.gbk
4729498*75322823731Island text1.4885524.787231.3254Neighbours21BLASTN729498.gbk
592321894217618959Island text1.627323.522628.0668Neighbours21BLASTN923218.gbk
6970670*99135320684Island text1.6763925.405634.8154Neighbours21BLASTN970670.gbk
72039435*206116121727Island text1.8002533.763229.6945NeighboursBLASTN+2039435.gbk
82237630226209924470Island text1.4186832.058642.6788Neighbours371BLASTN2237630.gbk
92426000244672920730Island text1.4854423.711123.5778Neighbours21BLASTN2426000.gbk
102481344251759936256Island text1.6156334.940542.1804Neighbours371BLASTN+IslandViewer 2481344.gbk
112838952*286037421423Island text1.682431.547155.3505Neighbours314BLASTN2838952.gbk
123153386*317159918214Island text1.5685322.452629.6656Neighbours21BLASTN+3153386.gbk
133580100360009920000Island text1.6007326.185633.1983Neighbours21BLASTN+3580100.gbk
143979729400301123283Island text1.3582627.316421.3059Neighbours21BLASTN+3979729.gbk
154358074438237824305Island text1.3841432.478136.8437Neighbours21BLASTN4358074.gbk
164740161*476993529775Island text1.861429.101239.7191Neighbours21BLASTN+4740161.gbk