Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007354: Ehrlichia canis str. Jake, complete genome

NCBI: NC_007354

Host Lineage: Ehrlichia canis; Ehrlichia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1989 in North Carolina, USA from a 2-year-old male dog. This organisms causes canine monocytic ehrlichiosis, which is a tick-born disease that causes severe morbidity in domesticated and wild dogs. The brown dog tick, Rhipicephalus sanguineus, transfers the organism from its salivary glands to the animal when feeding. Persistence in the vacuole leads to replication and cell division and eventual release from the cell which leads to further spreading of the bacterium throughout the host. The end result is an increase in platelet count and anemia.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17710813002652919Island text2.3619619.104131.6441Neighbours21BLASTN+77108.gbk
2233991*25671722727Island text2.90918.549435.1504Neighbours21BLASTN233991.gbk
353486555761222748Island text2.2967719.098621.2632Neighbours21BLASTN534865.gbk
4569321*60009930779Island text2.4872521.201732.3689Neighbours21BLASTN+IslandViewer 569321.gbk
575650078159925100Island text2.0540321.479133.5055Neighbours21BLASTN+IslandViewer 756500.gbk
6845500*87256527066Island text2.4644620.535540.4573Neighbours21BLASTN845500.gbk
7997580*102421326634Island text1.9759422.245130.428Neighbours21BLASTNIslandViewer 997580.gbk
81034000105609922100Island text2.0408217.521930.7346Neighbours21BLASTN1034000.gbk
91087456*111009922644Island text2.8092817.6833.914Neighbours21BLASTNIslandViewer 1087456.gbk