Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007350: Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,

NCBI: NC_007350

Host Lineage: Staphylococcus saprophyticus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: The original ATCC isolate was from a human urine specimen. Commensal Staphylococcal species that can cause acute urinary tract infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism, normally a commensal on human skin and mucous membranes, is now the second most common cause of acute urinary tract infections after Escherichia coli. It often causes uncomplicated urinary tract infections (UTI) in female outpatients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111259712597Island text1.5354418.16232.4887Neighbours21BLASTN1.gbk
2692041*71972727687Island text1.7534823.065832.5999Neighbours21BLASTN+692041.gbk
31551457*156963918183Island text1.8485318.816932.5192Neighbours21BLASTN1551457.gbk
41629694*165238822695Island text1.4512420.896237.5198Neighbours21BLASTN1629694.gbk
51971762*199495223191Island text1.6040617.52829.0596Neighbours21BLASTN1971762.gbk
62019623203854618924Island text1.7734518.850335.2357Neighbours21BLASTN2019623.gbk
72460134248476024627Island text1.6205120.52336.8907Neighbours21BLASTN2460134.gbk